Transcript: lnc-PYDC2-1:3

Basic information

LNCipedia transcript ID: lnc-PYDC2-1:3 
LNCipedia gene ID: lnc-PYDC2-1
Ensembl Gene ID: ENSG00000223812
Ensembl Transcript ID: ENST00000439804
Location (hg19): chr3:191275113-191308145
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 901 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005690; ENST00000439804; ENST00000439804.1; RP11-197K6.1-001; OTTHUMT00000343232.1; NONHSAT093972; ENST00000439804.5
Alternative gene names: XLOC_002968; linc-HRASLS-3; ENSG00000223812; RP11-197K6.1; ENSG00000223812.1; OTTHUMG00000156168.1; ENSG00000223812.5; ENSG00000223812.6; AC073365.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.8847 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PYDC2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PYDC2-1:3
3.1 lnc-PYDC2-1:3
4.0 lnc-PYDC2-1:3
4.1 lnc-PYDC2-1:3
5.0 lnc-PYDC2-1:3
5.1 lnc-MUC20-53:9
5.2 lnc-PYDC2-1:3