Transcript: lnc-PYDC2-3:2

Basic information

LNCipedia transcript ID: lnc-PYDC2-3:2 
LNCipedia gene ID: lnc-PYDC2-3
Ensembl Gene ID: ENSG00000232353
Ensembl Transcript ID: ENST00000444729
Location (hg19): chr3:191747669-191754346
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 672 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005693; ENST00000444729; ENST00000444729.1; RP11-655G22.1-002; OTTHUMT00000343178.1; NONHSAT093990
Alternative gene names: XLOC_002970; linc-HRASLS-1; ENSG00000232353; RP11-655G22.1; ENSG00000232353.1; OTTHUMG00000156146.1; ENSG00000232353.5; AC026320.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.6455 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PYDC2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PYDC2-3:1
3.1 lnc-PYDC2-3:2
4.0 lnc-PYDC2-3:2
4.1 lnc-PYDC2-3:2
5.0 lnc-PYDC2-3:2
5.1 lnc-MUC20-51:2
5.2 lnc-PYDC2-3:2