Transcript: lnc-RAB11FIP2-2:2

Basic information

LNCipedia transcript ID: lnc-RAB11FIP2-2:2 
LNCipedia gene ID: lnc-RAB11FIP2-2
Ensembl Gene ID: ENSG00000263041
Ensembl Transcript ID: ENST00000575236
Location (hg19): chr10:119585414-119590029
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575236.1; RP11-355F22.1-001; OTTHUMT00000436321.1; NONHSAT016541
Alternative gene names: ENSG00000263041.1; RP11-355F22.1; OTTHUMG00000177332.1; AL513324.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.7644 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB11FIP2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAB11FIP2-2:2
4.0 lnc-RAB11FIP2-2:2
4.1 lnc-RAB11FIP2-2:2
5.0 lnc-RAB11FIP2-2:2
5.1 lnc-NSMCE4A-75:2
5.2 lnc-RAB11FIP2-2:2