Transcript: lnc-RAB11FIP5-1:1

Basic information

LNCipedia transcript ID: lnc-RAB11FIP5-1:1 
LNCipedia gene ID: lnc-RAB11FIP5-1
Location (hg19): chr2:73383766-73385965
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004307; NONHSAT071607
Alternative gene names: XLOC_002160; linc-RAB11FIP5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.5339 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB11FIP5-1:1 yes no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB11FIP5-1:1
3.1 lnc-RAB11FIP5-1:1
4.0 lnc-RAB11FIP5-1:1
4.1 lnc-RAB11FIP5-1:1
5.0 lnc-RAB11FIP5-1:1
5.1 lnc-GKN2-97:1
5.2 lnc-RAB11FIP5-1:1