Transcript: lnc-RAB28-2:1

Basic information

LNCipedia transcript ID: lnc-RAB28-2:1 
LNCipedia gene ID: lnc-RAB28-2
Ensembl Gene ID: ENSG00000250371
Ensembl Transcript ID: ENST00000506899
Location (hg19): chr4:12860725-12866585
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2694 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007717; ENST00000506899; ENST00000506899.1; RP11-22A3.2-001; OTTHUMT00000365489.1; NONHSAT095566
Alternative gene names: XLOC_003885; linc-HS3ST1-5; ENSG00000250371; RP11-22A3.2; ENSG00000250371.1; OTTHUMG00000161598.1; AC007370.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.5605 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB28-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB28-2:1
3.1 lnc-RAB28-2:1
4.0 lnc-RAB28-2:1
4.1 lnc-RAB28-2:1
5.0 lnc-RAB28-2:1
5.1 lnc-AFAP1-47:1
5.2 lnc-RAB28-2:1