Transcript: lnc-RAB39A-2:1

Basic information

LNCipedia transcript ID: lnc-RAB39A-2:1 
LNCipedia gene ID: lnc-RAB39A-2
RefSeq ID: NR_028328
Location (hg19): chr11:107462471-107463949
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 972 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_028328; NR_028328.1
Alternative gene names: LOC643923


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -252.4596 non-coding 
CPAT coding probability 21.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB39A-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP001024.2-2:2
4.0 lnc-AP001024.2-2:2
4.1 lnc-AP001024.2-2:2
5.0 lnc-AP001024.2-2:2
5.1 lnc-ZC3H12C-25:2
5.2 lnc-RAB39A-2:1