Transcript: lnc-RAB43-1:3

Basic information

LNCipedia transcript ID: lnc-RAB43-1:3 
LNCipedia gene ID: lnc-RAB43-1
Location (hg19): chr3:128719477-128720388
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 538 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00005826; ENST00000503572.1; RP11-723O4.8-001; OTTHUMT00000369699.1; NONHSAT091991
Alternative gene names: XLOC_003245; linc-KIAA1257; ENSG00000250856.2; RP11-723O4.8; OTTHUMG00000162590.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -276.3167 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB43-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-723O4.6.1-1:2
3.1 lnc-RP11-723O4.6.1-1:1
4.0 lnc-RP11-723O4.6.1-1:1
4.1 lnc-RP11-723O4.6.1-1:1
5.0 lnc-RP11-723O4.6.1-1:1
5.1 lnc-ISY1-RAB43-1:2
5.2 lnc-RAB43-1:3