Transcript: lnc-RAB4A-1:1

Basic information

LNCipedia transcript ID: lnc-RAB4A-1:1 
LNCipedia gene ID: lnc-RAB4A-1
Location (hg19): chr1:229455027-229455445
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 334 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001320; NONHSAT010079
Alternative gene names: XLOC_000601; linc-URB2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.2123 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB4A-1:1 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Zhou (2015), Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB4A-1:1
3.1 lnc-RAB4A-1:1
4.0 lnc-RAB4A-1:1
4.1 lnc-RAB4A-1:1
5.0 lnc-RAB4A-1:1
5.1 lnc-ZNF678-59:1
5.2 lnc-RAB4A-1:1