Transcript: lnc-RAB6D-3:2

Basic information

LNCipedia transcript ID: lnc-RAB6D-3:2 
LNCipedia gene ID: lnc-RAB6D-3
Location (hg19): chr2:132227281-132229929
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 925 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004445
Alternative gene names: XLOC_002323; linc-LOC150786


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.079 non-coding 
CPAT coding probability 92.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAB6D-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf27B-3:2
3.1 lnc-C2orf27B-3:2
4.0 lnc-C2orf27B-3:2
4.1 lnc-C2orf27B-3:2
5.0 lnc-C2orf27B-3:2
5.1 lnc-PRSS40B-29:2
5.2 lnc-RAB6D-3:2