Transcript: lnc-RABL6-2:1

Basic information

LNCipedia transcript ID: lnc-RABL6-2:1 
LNCipedia gene ID: lnc-RABL6-2
Location (hg19): chr9:139736279-139736848
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016727; NONHSAT135608
Alternative gene names: XLOC_007617; linc-C9orf172


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.8416 non-coding 
CPAT coding probability 58.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RABL6-2:1 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf86-1:1
3.1 lnc-C9orf86-1:1
4.0 lnc-C9orf86-2:1
4.1 lnc-C9orf86-2:1
5.0 lnc-C9orf86-2:1
5.1 lnc-GPSM1-19:1
5.2 lnc-RABL6-2:1