Transcript: lnc-RALGAPA2-1:1

Basic information

LNCipedia transcript ID: lnc-RALGAPA2-1:1 
LNCipedia gene ID: lnc-RALGAPA2-1
Location (hg19): chr20:20702317-20703034
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028013; ENST00000417696; ENST00000417696.1; RP11-23O13.1-001; OTTHUMT00000078248.1; NONHSAT078906
Alternative gene names: XLOC_013674; linc-RALGAPA2-3; ENSG00000227223; RP11-23O13.1; ENSG00000227223.1; OTTHUMG00000032011.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.4995 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RALGAPA2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RALGAPA2-1:1
3.1 lnc-RALGAPA2-1:1
4.0 lnc-RALGAPA2-1:1
4.1 lnc-RALGAPA2-1:1
5.0 lnc-RALGAPA2-1:1
5.1 lnc-CST4-78:1
5.2 lnc-RALGAPA2-1:1