Transcript: lnc-RAP1A-1:1

Basic information

LNCipedia transcript ID: lnc-RAP1A-1:1 
LNCipedia gene ID: lnc-RAP1A-1
Location (hg19): chr1:112083986-112091943
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2131 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001ebq_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.2563 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP1A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAP1A-1:1
4.0 lnc-RAP1A-1:1
4.1 lnc-RAP1A-1:1
5.0 lnc-RAP1A-1:1
5.1 lnc-PIFO-8:1
5.2 lnc-RAP1A-1:1