Transcript: lnc-RAP1GAP2-5:3

Basic information

LNCipedia transcript ID: lnc-RAP1GAP2-5:3 
LNCipedia gene ID: lnc-RAP1GAP2-5
Location (hg19): chr17:2584242-2584528
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 287 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT144979
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.3621 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP1GAP2-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAP1GAP2-5:3
4.0 lnc-RAP1GAP2-5:3
4.1 lnc-RAP1GAP2-5:3
5.0 lnc-RAP1GAP2-5:3
5.1 lnc-RPA1-38:3
5.2 lnc-RAP1GAP2-5:3