Transcript: lnc-RAP2B-3:2

Basic information

LNCipedia transcript ID: lnc-RAP2B-3:2 
LNCipedia gene ID: lnc-RAP2B-3
Ensembl Gene ID: ENSG00000241912
Ensembl Transcript ID: ENST00000462300
Location (hg19): chr3:153094620-153095351
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 382 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005628; ENST00000462300; ENST00000462300.1; RP11-292E2.2-001; OTTHUMT00000356567.1; NONHSAT092781
Alternative gene names: XLOC_002881; linc-C3orf79-3; ENSG00000241912; RP11-292E2.2; ENSG00000241912.1; OTTHUMG00000159626.1; AC078788.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.7338 non-coding 
CPAT coding probability 15.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP2B-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C3orf79-3:1
3.1 lnc-C3orf79-3:1
4.0 lnc-C3orf79-3:1
4.1 lnc-C3orf79-3:1
5.0 lnc-C3orf79-3:1
5.1 lnc-SELENOT-41:2
5.2 lnc-RAP2B-3:2