Transcript: lnc-RAPGEF1-3:2

Basic information

LNCipedia transcript ID: lnc-RAPGEF1-3:2 
LNCipedia gene ID: lnc-RAPGEF1-3
Location (hg19): chr9:134907273-134952977
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 433 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT135244; ENST00000444872.2
Alternative gene names: ENSG00000230940.2; RP11-32B11.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.4128 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAPGEF1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAPGEF1-3:2
4.0 lnc-RAPGEF1-3:2
4.1 lnc-RAPGEF1-3:2
5.0 lnc-RAPGEF1-3:2
5.1 lnc-ABO-18:2
5.2 lnc-RAPGEF1-3:2