Transcript: lnc-RARB-1:2

Basic information

LNCipedia transcript ID: lnc-RARB-1:2 
LNCipedia gene ID: lnc-RARB-1
Location (hg19): chr3:24870831-24978992
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237838.1|FTMT21100057741.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -137.6853 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RARB-1:2 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RARB-1:2
5.0 lnc-RARB-1:2
5.1 lnc-CMC1-25:2
5.2 lnc-RARB-1:2