Transcript: lnc-RARB-1:4

Basic information

LNCipedia transcript ID: lnc-RARB-1:4 
LNCipedia gene ID: lnc-RARB-1
Location (hg19): chr3:24870831-25215860
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 446 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237838.1|FTMT21100044317.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -207.749 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RARB-1:4 yes no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RARB-1:4
5.0 lnc-RARB-1:4
5.1 lnc-CMC1-25:4
5.2 lnc-RARB-1:4