Transcript: lnc-RASA1-5:1

Basic information

LNCipedia transcript ID: lnc-RASA1-5:1 
LNCipedia gene ID: lnc-RASA1-5
Location (hg19): chr5:87987574-87988676
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 508 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000511000.1; CTC-467M3.2-001; OTTHUMT00000369827.1; NONHSAT102682
Alternative gene names: ENSG00000250555.1; CTC-467M3.2; OTTHUMG00000162635.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -365.4899 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASA1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASA1-5:1
4.0 lnc-RASA1-5:1
4.1 lnc-RASA1-5:1
5.0 lnc-RASA1-5:1
5.1 lnc-GPR150-97:1
5.2 lnc-RASA1-5:1