Transcript: lnc-RASEF-1:1

Basic information

LNCipedia transcript ID: lnc-RASEF-1:1 
LNCipedia gene ID: lnc-RASEF-1
Location (hg19): chr9:85441604-85443493
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 330 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT132728; FPKM1_group_33343_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.7072 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASEF-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASEF-1:1
4.0 lnc-RASEF-1:1
4.1 lnc-RASEF-1:1
5.0 lnc-RASEF-1:1
5.1 lnc-SEMA4D-96:1
5.2 lnc-RASEF-1:1