Transcript: lnc-RASGEF1B-1:2

Basic information

LNCipedia transcript ID: lnc-RASGEF1B-1:2 
LNCipedia gene ID: lnc-RASGEF1B-1
Location (hg19): chr4:82523951-82965397
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 472 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000514050.1; RP11-689K5.3-002; OTTHUMT00000363619.1; ENST00000514050.5
Alternative gene names: ENSG00000251331.1; RP11-689K5.3; OTTHUMG00000161063.1; ENSG00000251331.2; ENSG00000251331.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -268.9005 non-coding 
CPAT coding probability 21.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASGEF1B-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGEF1B-1:2
4.0 lnc-RASGEF1B-1:2
4.1 lnc-RASGEF1B-1:2
5.0 lnc-RASGEF1B-1:2
5.1 lnc-TMEM150C-13:5
5.2 lnc-RASGEF1B-1:2