Transcript: lnc-RBBP6-4:3

Basic information

LNCipedia transcript ID: lnc-RBBP6-4:3 
LNCipedia gene ID: lnc-RBBP6-4
Location (hg19): chr16:24621587-24652278
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 293 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000566108.1; CTD-2540M10.1-001; OTTHUMT00000435961.1
Alternative gene names: ENSG00000259888.1; CTD-2540M10.1; OTTHUMG00000177236.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBBP6-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBBP6-1:2
4.0 lnc-RBBP6-1:2
4.1 lnc-TNRC6A-4:3
5.0 lnc-TNRC6A-4:3
5.1 lnc-SGF29-56:3
5.2 lnc-RBBP6-4:3