Transcript: lnc-RBBP9-11:1

Basic information

LNCipedia transcript ID: lnc-RBBP9-11:1 
LNCipedia gene ID: lnc-RBBP9-11
Ensembl Gene ID: ENSG00000179447
Ensembl Transcript ID: ENST00000319682
RefSeq ID: NR_024564
Location (hg19): chr20:19222946-19265240
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1789 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000319682.2; RP5-1027G4.3-001; OTTHUMT00000078202.1; NONHSAT078859; NR_024564; NR_024564.1
Alternative gene names: ENSG00000179447.2; RP5-1027G4.3; OTTHUMG00000031990.1; AL049647.1; LOC100130264


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.8168 non-coding 
CPAT coding probability 45.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RBBP9-11:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf78-5:1
4.0 lnc-C20orf78-5:1
4.1 lnc-C20orf78-5:1
5.0 lnc-C20orf78-5:1
5.1 lnc-RRBP1-40:1
5.2 lnc-RBBP9-11:1