Transcript: lnc-RBBP9-4:1

Basic information

LNCipedia transcript ID: lnc-RBBP9-4:1 
LNCipedia gene ID: lnc-RBBP9-4
Ensembl Gene ID: ENSG00000233993
Ensembl Transcript ID: ENST00000428285
Location (hg19): chr20:18655039-18679353
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1695 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428285.1; RP11-379J5.5-001; OTTHUMT00000106518.1; NONHSAT078841
Alternative gene names: ENSG00000233993.1; RP11-379J5.5; OTTHUMG00000046204.1; AL121900.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.645 non-coding 
CPAT coding probability 7.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBBP9-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf78-2:1
4.0 lnc-C20orf78-2:1
4.1 lnc-C20orf78-2:1
5.0 lnc-C20orf78-2:1
5.1 lnc-RRBP1-30:1
5.2 lnc-RBBP9-4:1