Transcript: lnc-RBBP9-6:1

Basic information

LNCipedia transcript ID: lnc-RBBP9-6:1 
LNCipedia gene ID: lnc-RBBP9-6
Ensembl Gene ID: ENSG00000149443
Ensembl Transcript ID: ENST00000623418
Location (hg19): chr20:18790372-18810797
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 606 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623418.1
Alternative gene names: ENSG00000149443.7; C20orf78


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.6819 non-coding 
CPAT coding probability 45.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RBBP9-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C20orf78-6:2
4.1 lnc-C20orf78-6:2
5.0 lnc-C20orf78-6:2
5.1 lnc-RRBP1-34:1
5.2 lnc-RBBP9-6:1