Transcript: lnc-RBM12B-2:2

Basic information

LNCipedia transcript ID: lnc-RBM12B-2:2 
LNCipedia gene ID: lnc-RBM12B-2
Ensembl Gene ID: ENSG00000264448
Ensembl Transcript ID: ENST00000607097
Location (hg19): chr8:94927962-94928910
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 949 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607097.1
Alternative gene names: ENSG00000264448.2; MIR378D2; ENSG00000264448.3; RP3-388N13.5; ENSG00000264448.4; ENSG00000264448.5; AC084346.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -230.2849 non-coding 
CPAT coding probability 6.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBM12B-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBM12B-7:1
4.0 lnc-RBM12B-7:1
4.1 lnc-RBM12B-2:2
5.0 lnc-RBM12B-2:2
5.1 lnc-ZNF706-169:1
5.2 lnc-RBM12B-2:2