Transcript: lnc-RBM26-3:1

Basic information

LNCipedia transcript ID: lnc-RBM26-3:1 
LNCipedia gene ID: lnc-RBM26-3
Location (hg19): chr13:80140881-80144983
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021675; ENST00000450187; ENST00000450187.1; RP11-25J23.3-001; OTTHUMT00000045379.1; NONHSAT034491
Alternative gene names: XLOC_010668; linc-RBM26-3; ENSG00000227676; RP11-25J23.3; ENSG00000227676.1; OTTHUMG00000017135.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -326.9846 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBM26-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RBM26-2:1
3.1 lnc-RBM26-3:1
4.0 lnc-RBM26-3:1
4.1 lnc-RBM26-3:1
5.0 lnc-RBM26-3:1
5.1 lnc-IRS2-133:1
5.2 lnc-RBM26-3:1