Transcript: lnc-RBM43-4:1

Basic information

LNCipedia transcript ID: lnc-RBM43-4:1 
LNCipedia gene ID: lnc-RBM43-4
Ensembl Gene ID: ENSG00000222031
Ensembl Transcript ID: ENST00000409243
Location (hg19): chr2:151857734-151905288
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000409243.1
Alternative gene names: ENSG00000222031.1; AC023469.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.6468 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBM43-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC023469.1.1-3:1
4.1 lnc-AC023469.1.1-3:1
5.0 lnc-AC023469.1.1-3:1
5.1 lnc-MMADHC-19:1
5.2 lnc-RBM43-4:1