Transcript: lnc-RBMX-1:1

Basic information

LNCipedia transcript ID: lnc-RBMX-1:1 
LNCipedia gene ID: lnc-RBMX-1
Location (hg19): chrX:135923090-135929956
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3018 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435597; ENST00000435597.1; RP11-1114A5.4-001; OTTHUMT00000058505.1; NONHSAT138732
Alternative gene names: ENSG00000232611; RP11-1114A5.4; ENSG00000232611.1; OTTHUMG00000022515.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.9283 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBMX-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RBMX-1:1
3.1 lnc-RBMX-1:1
4.0 lnc-RBMX-1:1
4.1 lnc-RBMX-1:1
5.0 lnc-RBMX-1:1
5.1 lnc-ETDB-27:1
5.2 lnc-RBMX-1:1