Transcript: lnc-RBP3-1:1

Basic information

LNCipedia transcript ID: lnc-RBP3-1:1 
LNCipedia gene ID: lnc-RBP3-1
RefSeq ID: NR_134500
Location (hg19): chr10:48324788-48332197
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 599 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017974; ENST00000454672; ENST00000454672.1; RP11-463P17.1-001; OTTHUMT00000047886.1; NONHSAT013216; NR_134500.1
Alternative gene names: XLOC_008809; linc-AGAP9-1; ENSG00000226044; RP11-463P17.1; ENSG00000226044.1; OTTHUMG00000018145.1; LOC107001062


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.3499 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBP3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RBP3-1:1
3.1 lnc-RBP3-1:1
4.0 lnc-RBP3-1:1
4.1 lnc-RBP3-1:1
5.0 lnc-RBP3-1:1
5.1 lnc-NPY4R2-10:1
5.2 lnc-RBP3-1:1