Transcript: lnc-RC3H1-1:5

Basic information

LNCipedia transcript ID: lnc-RC3H1-1:5 
LNCipedia gene ID: lnc-RC3H1-1
Location (hg19): chr1:174083921-174128799
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1540 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT007722
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.8946 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RC3H1-1:5 yes no no no

Available literature

  1. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  2. Tang (2015), Circulation long non-coding RNAs act as biomarkers for predicting tumorigenesis and metastasis in hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RC3H1-1:5
4.0 lnc-RC3H1-1:5
4.1 lnc-RC3H1-1:5
5.0 lnc-RC3H1-1:5
5.1 lnc-SH2D1B-128:3
5.2 lnc-RC3H1-1:5