Transcript: lnc-RC3H1-1:7

Basic information

LNCipedia transcript ID: lnc-RC3H1-1:7 
LNCipedia gene ID: lnc-RC3H1-1
Location (hg19): chr1:174084521-174129142
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 535 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227373.1|ENST00000419983.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.8946 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RC3H1-1:7 yes no no no

Available literature

  1. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  2. Tang (2015), Circulation long non-coding RNAs act as biomarkers for predicting tumorigenesis and metastasis in hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RC3H1-1:7
5.0 lnc-RC3H1-1:7
5.1 lnc-SH2D1B-128:2
5.2 lnc-RC3H1-1:7