Transcript: lnc-RCC1L-3:2

Basic information

LNCipedia transcript ID: lnc-RCC1L-3:2 
LNCipedia gene ID: lnc-RCC1L-3
Location (hg19): chr7:74855366-74856154
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 429 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000452986.1; AC004878.2-002; OTTHUMT00000342382.2; NONHSAT121513
Alternative gene names: ENSG00000224804.4; AC004878.2; OTTHUMG00000165163.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.7752 non-coding 
CPAT coding probability 7.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RCC1L-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2IRD2B-2:2
4.0 lnc-GTF2IRD2B-2:2
4.1 lnc-GTF2IRD2B-2:2
5.0 lnc-GTF2IRD2B-2:2
5.1 lnc-TRIM74-33:2
5.2 lnc-RCC1L-3:2