Transcript: lnc-RCL1-1:1

Basic information

LNCipedia transcript ID: lnc-RCL1-1:1 
LNCipedia gene ID: lnc-RCL1-1
Location (hg19): chr9:4860454-4885917
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1878 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000445485.1; RP11-125K10.4-001; OTTHUMT00000051595.1; NONHSAT130073
Alternative gene names: ENSG00000243754.1; RP11-125K10.4; OTTHUMG00000019476.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.8189 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RCL1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RCL1-1:1
4.0 lnc-RCL1-1:1
4.1 lnc-RCL1-1:1
5.0 lnc-RCL1-1:1
5.1 lnc-RECK-268:1
5.2 lnc-RCL1-1:1