Transcript: lnc-RCN1-8:1

Basic information

LNCipedia transcript ID: lnc-RCN1-8:1 
LNCipedia gene ID: lnc-RCN1-8
Ensembl Gene ID: ENSG00000255375
Ensembl Transcript ID: ENST00000525133
Location (hg19): chr11:32154245-32165125
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 646 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525133; ENST00000525133.1; RP1-65P5.5-001; OTTHUMT00000388756.1; NONHSAT018650
Alternative gene names: ENSG00000255375; RP1-65P5.5; ENSG00000255375.1; OTTHUMG00000166257.1; AL078612.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.7841 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RCN1-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RCN1-1:1
3.1 lnc-RCN1-1:1
4.0 lnc-RCN1-1:1
4.1 lnc-RCN1-1:1
5.0 lnc-RCN1-1:1
5.1 lnc-QSER1-7:1
5.2 lnc-RCN1-8:1