Transcript: lnc-RECQL4-2:1

Basic information

LNCipedia transcript ID: lnc-RECQL4-2:1 
LNCipedia gene ID: lnc-RECQL4-2
Ensembl Gene ID: ENSG00000255182
Ensembl Transcript ID: ENST00000527086
Location (hg19): chr8:145724296-145730827
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 556 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527086.1; CTD-2517M22.14-001; OTTHUMT00000382468.1; NONHSAT129774
Alternative gene names: ENSG00000255182.1; CTD-2517M22.14; OTTHUMG00000165174.1; ENSG00000255182.2; AC084125.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 75.7162 coding 
CPAT coding probability 13.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RECQL4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2517M22.14.1-1:1
4.0 lnc-CTD-2517M22.14.1-1:1
4.1 lnc-CTD-2517M22.14.1-1:1
5.0 lnc-CTD-2517M22.14.1-1:1
5.1 lnc-TMEM249-19:1
5.2 lnc-RECQL4-2:1