Transcript: lnc-REG3A-1:1

Basic information

LNCipedia transcript ID: lnc-REG3A-1:1 
LNCipedia gene ID: lnc-REG3A-1
Ensembl Gene ID: ENSG00000229385
Ensembl Transcript ID: ENST00000443301
RefSeq ID: NR_110289
Location (hg19): chr2:79720842-79727970
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 669 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000443301.1; AC010975.1-001; OTTHUMT00000328534.1; NONHSAT071880; NR_110289; FPKM1_group_16571_transcript_1; NR_110289.1
Alternative gene names: ENSG00000229385.1; AC010975.1; OTTHUMG00000152910.1; LOC101927987


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.1136 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-REG3A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-REG3A-1:1
4.0 lnc-REG3A-1:1
4.1 lnc-REG3A-1:1
5.0 lnc-REG3A-1:1
5.1 lnc-GKN2-217:1
5.2 lnc-REG3A-1:1