Transcript: lnc-RERE-6:1

Basic information

LNCipedia transcript ID: lnc-RERE-6:1 
LNCipedia gene ID: lnc-RERE-6
Location (hg19): chr1:8935847-8938066
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 744 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000414948.1; ENO1-IT1-001; OTTHUMT00000004953.1; NONHSAT000769
Alternative gene names: ENSG00000236269.1; ENO1-IT1; OTTHUMG00000001778.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.0469 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RERE-6:1 yes no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RERE-1:1
4.0 ENO1-IT1:1
4.1 ENO1-IT1:1
5.0 ENO1-IT1:1
5.1 lnc-CLSTN1-15:1
5.2 lnc-RERE-6:1