Transcript: lnc-RFC3-2:1

Basic information

LNCipedia transcript ID: lnc-RFC3-2:1 
LNCipedia gene ID: lnc-RFC3-2
Ensembl Gene ID: ENSG00000234535
Ensembl Transcript ID: ENST00000442716
Location (hg19): chr13:34185104-34185659
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 385 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442716; ENST00000442716.1; RP11-37L2.1-001; OTTHUMT00000044446.1; NONHSAT033152
Alternative gene names: ENSG00000234535; RP11-37L2.1; ENSG00000234535.1; OTTHUMG00000016713.1; AL161719.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.7834 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFC3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RFC3-2:1
3.1 lnc-RFC3-2:1
4.0 lnc-RFC3-2:1
4.1 lnc-RFC3-2:1
5.0 lnc-RFC3-2:1
5.1 lnc-KL-2:53
5.2 lnc-RFC3-2:1