Transcript: lnc-RFC5-4:1

Basic information

LNCipedia transcript ID: lnc-RFC5-4:1 
LNCipedia gene ID: lnc-RFC5-4
Ensembl Gene ID: ENSG00000276292
Ensembl Transcript ID: ENST00000621854
Location (hg19): chr12:118475674-118475886
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 213 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621854.1
Alternative gene names: ENSG00000276292.1; RP11-33N14.5; AC131159.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -396.2495 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFC5-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RFC5-4:1
4.1 lnc-RFC5-4:1
5.0 lnc-RFC5-4:1
5.1 lnc-FBXW8-10:1
5.2 lnc-RFC5-4:1