Transcript: lnc-RFPL3-1:1

Basic information

LNCipedia transcript ID: lnc-RFPL3-1:1 
LNCipedia gene ID: lnc-RFPL3-1
Ensembl Gene ID: ENSG00000230736
Ensembl Transcript ID: ENST00000420171
RefSeq ID: NR_038918
Location (hg19): chr22:32772651-32780330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1558 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000420171.1; RP1-149A16.3-001; OTTHUMT00000129022.1; NONHSAT084965; NR_038918.1
Alternative gene names: ENSG00000230736.2; RP1-149A16.3; OTTHUMG00000058267.1; AL021937.1; LOC339666


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.9532 non-coding 
CPAT coding probability 6.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFPL3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFPL3-1:1
4.0 lnc-RFPL3-1:1
4.1 lnc-RFPL3-1:1
5.0 lnc-RFPL3-1:1
5.1 lnc-SFI1-18:1
5.2 lnc-RFPL3-1:1