Transcript: lnc-RFT1-1:1

Basic information

LNCipedia transcript ID: lnc-RFT1-1:1 
LNCipedia gene ID: lnc-RFT1-1
Location (hg19): chr3:53112200-53120488
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 751 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006513; NONHSAT089982
Alternative gene names: XLOC_003130; linc-SFMBT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.717 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFT1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RFT1-1:1
3.1 lnc-RFT1-1:1
4.0 lnc-RFT1-1:1
4.1 lnc-RFT1-1:1
5.0 lnc-RFT1-1:1
5.1 lnc-ACTR8-9:2
5.2 lnc-RFT1-1:1