Transcript: lnc-RGMA-28:1

Basic information

LNCipedia transcript ID: lnc-RGMA-28:1 
LNCipedia gene ID: lnc-RGMA-28
Location (hg19): chr15:95532480-95561355
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 12302 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000025989.1|ENCT00000152529.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
NFKYIEEIFAESMIMVR 90.9090909090909% sense-1
Lee translation initiation sites non-coding 
PhyloCSF score 5.2989 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RGMA-28:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC016251.1-28:2
5.0 lnc-AC016251.1-28:2
5.1 lnc-CIB1-51:1
5.2 lnc-RGMA-28:1