Transcript: lnc-RGPD4-3:1

Basic information

LNCipedia transcript ID: lnc-RGPD4-3:1 
LNCipedia gene ID: lnc-RGPD4-3
Ensembl Gene ID: ENSG00000225588
Ensembl Transcript ID: ENST00000422203
Location (hg19): chr2:107978738-108022716
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 648 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422203; ENST00000422203.2; AC096669.1-002; OTTHUMT00000329746.3; NONHSAT073058
Alternative gene names: ENSG00000225588; AC096669.1; ENSG00000225588.2; OTTHUMG00000153144.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1296 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGPD4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGPD4-3:2
3.1 lnc-RGPD4-3:1
4.0 lnc-RGPD4-3:1
4.1 lnc-RGPD4-3:1
5.0 lnc-RGPD4-3:1
5.1 lnc-SULT1C2-8:2
5.2 lnc-RGPD4-3:1