Transcript: lnc-RGPD4-3:2

Basic information

LNCipedia transcript ID: lnc-RGPD4-3:2 
LNCipedia gene ID: lnc-RGPD4-3
Location (hg19): chr2:107978738-108022716
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 649 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002969; NONHSAT073059
Alternative gene names: XLOC_001618; linc-RGPD4-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1296 non-coding 
CPAT coding probability 11.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGPD4-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGPD4-3:1
3.1 lnc-RGPD4-3:2
4.0 lnc-RGPD4-3:2
4.1 lnc-RGPD4-3:2
5.0 lnc-RGPD4-3:2
5.1 lnc-SULT1C2-8:1
5.2 lnc-RGPD4-3:2