Transcript: lnc-RGPD8-5:2

Basic information

LNCipedia transcript ID: lnc-RGPD8-5:2 
LNCipedia gene ID: lnc-RGPD8-5
Location (hg19): chr2:113332394-113342392
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 9494 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000049664.1|HBMT00000813380.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 502.2807 coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RGPD8-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RGPD8-5:2
5.0 lnc-RGPD8-5:2
5.1 lnc-EN1-55:1
5.2 lnc-RGPD8-5:2