Transcript: lnc-RGS18-2:1

Basic information

LNCipedia transcript ID: lnc-RGS18-2:1 
LNCipedia gene ID: lnc-RGS18-2
Location (hg19): chr1:191190289-191197597
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 299 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000359; ENST00000434983; ENST00000434983.1; RP11-309H21.2-001; OTTHUMT00000098604.1; NONHSAT008518
Alternative gene names: XLOC_000506; linc-RGS18-2; ENSG00000233882; RP11-309H21.2; ENSG00000233882.1; OTTHUMG00000041127.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.9312 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS18-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGS18-2:1
3.1 lnc-RGS18-2:1
4.0 lnc-RGS18-2:1
4.1 lnc-RGS18-2:1
5.0 lnc-RGS18-2:1
5.1 lnc-CFHR3-67:1
5.2 lnc-RGS18-2:1