Transcript: lnc-RGS5-1:8

Basic information

LNCipedia transcript ID: lnc-RGS5-1:8 
LNCipedia gene ID: lnc-RGS5-1
Ensembl Gene ID: ENSG00000232995
Ensembl Transcript ID: ENST00000427213
Location (hg19): chr1:163218109-163291542
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 616 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427213.1; RP11-267N12.3-005; OTTHUMT00000080775.1; NONHSAT007252; ENST00000427213.5
Alternative gene names: ENSG00000232995.2; RP11-267N12.3; OTTHUMG00000033150.2; ENSG00000232995.3; ENSG00000232995.7; RGS5; AL592435.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -617.6793 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS5-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGS5-1:8
4.0 lnc-RGS5-1:8
4.1 lnc-RGS5-1:8
5.0 lnc-RGS5-1:8
5.1 lnc-SH2D1B-22:10
5.2 lnc-RGS5-1:8