Transcript: lnc-RHOH-1:1

Basic information

LNCipedia transcript ID: lnc-RHOH-1:1 
LNCipedia gene ID: lnc-RHOH-1
Ensembl Gene ID: ENSG00000250338
Ensembl Transcript ID: ENST00000515422
Location (hg19): chr4:40267092-40268077
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007518; ENST00000515422; ENST00000515422.1; RP11-395I6.2-001; OTTHUMT00000361279.1; NONHSAT096128
Alternative gene names: XLOC_003519; linc-CHRNA9-2; ENSG00000250338; RP11-395I6.2; ENSG00000250338.1; OTTHUMG00000160577.1; AC095057.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.6977 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOH-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RHOH-1:1
3.1 lnc-RHOH-1:1
4.0 lnc-RHOH-1:1
4.1 lnc-RHOH-1:1
5.0 lnc-RHOH-1:1
5.1 lnc-GABRB1-46:1
5.2 lnc-RHOH-1:1