Transcript: lnc-RHOXF1-3:1

Basic information

LNCipedia transcript ID: lnc-RHOXF1-3:1 
LNCipedia gene ID: lnc-RHOXF1-3
Location (hg19): chrX:119377297-119379279
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1983 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT138374
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.0817 non-coding 
CPAT coding probability 66.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RHOXF1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM70A-1:11
4.0 lnc-RHOXF1-3:1
4.1 lnc-RHOXF1-3:1
5.0 lnc-RHOXF1-3:1
5.1 lnc-CT47A8-10:1
5.2 lnc-RHOXF1-3:1