Transcript: lnc-RHOXF1-3:3

Basic information

LNCipedia transcript ID: lnc-RHOXF1-3:3 
LNCipedia gene ID: lnc-RHOXF1-3
Location (hg19): chrX:119377874-119379122
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000536487; ENST00000536487.1; NKAPP1-201; NONHSAT138375
Alternative gene names: ENSG00000233382; NKAPP1; ENSG00000233382.4; OTTHUMG00000022295.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.133 non-coding 
CPAT coding probability 57.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RHOXF1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM70A-1:2
3.1 lnc-FAM70A-1:2
4.0 lnc-RHOXF1-3:3
4.1 lnc-RHOXF1-3:3
5.0 lnc-RHOXF1-3:3
5.1 lnc-CT47A8-10:3
5.2 lnc-RHOXF1-3:3